STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaYGlycoprotein/polysaccharide metabolism; Residues 1 to 190 of 190 are 99.47 pct identical to residues 1 to 190 of 190 from Escherichia coli K-12 Strain MG1655: B0453. (190 aa)    
Predicted Functional Partners:
osmY
Hyperosmotically inducible periplasmic protein; Residues 1 to 201 of 201 are 99.50 pct identical to residues 1 to 201 of 201 from Escherichia coli K-12 Strain MG1655: B4376.
  
  
 0.867
osmE
Activator of ntrL gene; Residues 1 to 112 of 112 are 100.00 pct identical to residues 1 to 112 of 112 from Escherichia coli K-12 Strain MG1655: B1739.
  
  
 0.774
wcaK
Putative galactokinase; Residues 1 to 426 of 426 are 99.06 pct identical to residues 1 to 426 of 426 from Escherichia coli K-12 Strain MG1655: B2045.
  
     0.715
ygaU
Orf, hypothetical protein; Residues 1 to 149 of 149 are 99.32 pct identical to residues 1 to 149 of 149 from Escherichia coli K-12 Strain MG1655: B2665.
  
  
 0.714
yehV
Putative transcriptional regulator; Residues 1 to 215 of 215 are 99.06 pct identical to residues 29 to 243 of 243 from Escherichia coli K-12 Strain MG1655: B2127.
  
     0.687
yqjC
Orf, hypothetical protein; Residues 1 to 127 of 127 are 100.00 pct identical to residues 1 to 127 of 127 from Escherichia coli K-12 Strain MG1655: B3097.
  
    0.679
yibL
Orf, hypothetical protein; Residues 1 to 120 of 120 are 100.00 pct identical to residues 1 to 120 of 120 from Escherichia coli K-12 Strain MG1655: B3602.
  
     0.679
ychP
Hypothetical protein; Residues 1 to 417 of 417 are 99.52 pct identical to residues 1 to 417 of 417 from Escherichia coli K-12 Strain MG1655: B1220.
  
     0.678
elaB
Orf, hypothetical protein; Residues 1 to 101 of 101 are 100.00 pct identical to residues 1 to 101 of 101 from Escherichia coli K-12 Strain MG1655: B2266; Belongs to the ElaB/YgaM/YqjD family.
  
    0.665
mdoB
Phosphoglycerol transferase I; Transfers a phosphoglycerol residue from phosphatidylglycerol to the membrane-bound nascent glucan backbones; Belongs to the OpgB family.
  
     0.663
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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