STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhSOrf, hypothetical protein; Part of the ABC transporter complex YbhFSR that could be involved in efflux of cefoperazone. Probably involved in the translocation of the substrate across the membrane. (377 aa)    
Predicted Functional Partners:
ybhF
Putative ATP-binding component of a transport system; Residues 1 to 583 of 583 are 99.65 pct identical to residues 1 to 583 of 583 from Escherichia coli K-12 Strain MG1655: B0794.
 
 0.999
ybhR
Orf, hypothetical protein; Part of the ABC transporter complex YbhFSR that could be involved in efflux of cefoperazone. Probably involved in the translocation of the substrate across the membrane.
 
 
0.984
ybhG
Putative membrane protein; Residues 1 to 332 of 332 are 99.69 pct identical to residues 1 to 332 of 332 from Escherichia coli K-12 Strain MG1655: B0795.
 
  
 0.966
ybiH
Putative transcriptional regulator; Residues 1 to 227 of 227 are 100.00 pct identical to residues 1 to 227 of 227 from Escherichia coli K-12 Strain MG1655: B0796.
 
  
 0.882
yhiI
Putative membrane protein; Residues 1 to 355 of 355 are 99.43 pct identical to residues 1 to 355 of 355 from Escherichia coli K-12 Strain MG1655: B3487.
 
  
 0.750
yhbG
Putative ATP-binding component of a transport system; Part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. Probably responsible for energy coupling to the transport system (By similarity).
   
 0.706
yhiH
Putative ATP-binding component of a transport system, fragment 1; Residues 1 to 894 of 894 are 99.32 pct identical to residues 1 to 894 of 894 from Escherichia coli K-12 Strain MG1655: B3486.
 
 
0.651
yadG
Putative ATP-binding component of a transport system; Residues 1 to 308 of 308 are 99.67 pct identical to residues 1 to 308 of 308 from Escherichia coli K-12 Strain MG1655: B0127.
 
  
 0.585
yhhJ
Putative transporter; Residues 1 to 375 of 375 are 99.73 pct identical to residues 1 to 375 of 375 from Escherichia coli K-12 Strain MG1655: B3485.
 
  
 
0.572
rhlE
Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
       0.482
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.