STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mokBOrf, hypothetical protein; Residues 1 to 55 of 55 are 94.54 pct identical to residues 1 to 55 of 55 from Escherichia coli K-12 Strain MG1655: B1420. (55 aa)    
Predicted Functional Partners:
ybaM
Hypothetical protein; Residues 1 to 52 of 54 are 86.53 pct identical to residues 1 to 52 of 53 from Escherichia coli K-12 Strain MG1655: B0466.
      
 0.557
ydbL
Hypothetical protein; Residues 1 to 109 of 109 are 72.47 pct identical to residues 1 to 109 of 110 from GenPept 118 : gi|1787648|gb|AAC74465.1| (AE000235) orf, hypothetical protein [Escherichia coli].
      
 0.557
ynhA
Orf, hypothetical protein; Participates in cysteine desulfuration mediated by SufS. Cysteine desulfuration mobilizes sulfur from L-cysteine to yield L- alanine and constitutes an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Functions as a sulfur acceptor for SufS, by mediating the direct transfer of the sulfur atom from the S-sulfanylcysteine of SufS, an intermediate product of cysteine desulfuration process; Belongs to the SufE family.
      
 0.557
hyaE
Processing of HyaA and HyaB proteins; Residues 1 to 132 of 132 are 99.24 pct identical to residues 1 to 132 of 132 from Escherichia coli K-12 Strain MG1655: B0976.
      
 0.551
ybdJ
Orf, hypothetical protein; Residues 1 to 82 of 82 are 97.56 pct identical to residues 1 to 82 of 82 from Escherichia coli K-12 Strain MG1655: B0580.
      
 0.465
ynfA
Orf, hypothetical protein; Residues 1 to 108 of 108 are 98.14 pct identical to residues 1 to 108 of 108 from Escherichia coli K-12 Strain MG1655: B1582.
      
 0.465
hokE
Hypothetical protein; Toxic component of a type I toxin-antitoxin (TA) system (By similarity). When overexpressed kills cells within minutes; causes collapse of the transmembrane potential and arrest of respiration (By similarity). Its toxic effect is probably neutralized by an antisense antitoxin Sok RNA (By similarity); Belongs to the Hok/Gef family.
      
 0.463
yniB
Orf, hypothetical protein; Residues 1 to 178 of 178 are 97.75 pct identical to residues 1 to 178 of 178 from Escherichia coli K-12 Strain MG1655: B1726.
      
 0.463
srmB
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily.
      
 0.461
ilvY
Positive regulator for ilvC; Residues 1 to 297 of 297 are 99.32 pct identical to residues 1 to 297 of 297 from Escherichia coli K-12 Strain MG1655: B3773; Belongs to the LysR transcriptional regulatory family.
      
 0.461
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.