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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedDOrf, hypothetical protein; Residues 1 to 137 of 137 are 99.27 pct identical to residues 1 to 137 of 137 from Escherichia coli K-12 Strain MG1655: B1928. (137 aa)    
Predicted Functional Partners:
yedE
Putative transport system permease protein; Residues 1 to 401 of 401 are 99.75 pct identical to residues 1 to 401 of 401 from Escherichia coli K-12 Strain MG1655: B1929.
       0.503
yedF
Orf, hypothetical protein; Residues 1 to 77 of 77 are 100.00 pct identical to residues 1 to 77 of 77 from Escherichia coli K-12 Strain MG1655: B1930; Belongs to the sulfur carrier protein TusA family.
       0.503
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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