STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yphGOrf, hypothetical protein; Residues 1 to 1124 of 1124 are 98.04 pct identical to residues 1 to 1124 of 1124 from Escherichia coli K-12 Strain MG1655: B2549. (1124 aa)    
Predicted Functional Partners:
yphH
Putative NAGC-like transcriptional regulator; Residues 1 to 399 of 399 are 98.99 pct identical to residues 1 to 399 of 399 from Escherichia coli K-12 Strain MG1655: B2550.
 
   
 0.893
yphC_1
Putative oxidoreductase; Residues 1 to 74 of 74 are 98.64 pct identical to residues 1 to 74 of 364 from Escherichia coli K-12 Strain MG1655: B2545.
 
     0.804
yphF
Putative LACI-type transcriptional regulator; Residues 1 to 327 of 327 are 99.08 pct identical to residues 1 to 327 of 327 from Escherichia coli K-12 Strain MG1655: B2548.
 
     0.701
yphB
Orf, hypothetical protein; Residues 1 to 290 of 290 are 98.96 pct identical to residues 1 to 290 of 290 from Escherichia coli K-12 Strain MG1655: B2544.
 
     0.645
yjiS
Orf, hypothetical protein; Residues 1 to 54 of 54 are 90.74 pct identical to residues 1 to 54 of 54 from Escherichia coli K-12 Strain MG1655: B4341.
      
 0.627
ycfT
Orf, hypothetical protein; Residues 1 to 357 of 357 are 98.87 pct identical to residues 1 to 357 of 357 from Escherichia coli K-12 Strain MG1655: B1115.
  
     0.598
yphC_2
Putative oxidoreductase; Residues 1 to 277 of 277 are 99.27 pct identical to residues 88 to 364 of 364 from Escherichia coli K-12 Strain MG1655: B2545.
 
     0.572
yphE
Putative ATP-binding component of a transport system; Residues 1 to 503 of 503 are 99.00 pct identical to residues 1 to 503 of 503 from Escherichia coli K-12 Strain MG1655: B2547.
       0.492
yphD
Putative transport system permease protein; Residues 1 to 332 of 332 are 99.09 pct identical to residues 1 to 332 of 332 from Escherichia coli K-12 Strain MG1655: B2546; Belongs to the binding-protein-dependent transport system permease family.
       0.452
yidS
Orf, hypothetical protein; Residues 1 to 361 of 361 are 96.95 pct identical to residues 1 to 361 of 361 from Escherichia coli K-12 Strain MG1655: B3690; Belongs to the CbrA family.
 
     0.451
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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