STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Z4315Unknown protein encoded by ISEc8; Residues 20 to 223 of 224 are 39.04 pct identical to residues 19 to 215 of 216 from GenPept 118 : gi|6009425|dbj|BAA84884.1| (AB024946) orf49 [Escherichia coli]. (224 aa)    
Predicted Functional Partners:
tnpB-4
Unknown protein encoded by ISEc8; Residues 1 to 115 of 115 are 81.73 pct identical to residues 1 to 115 of 115 from GenPept 118 : gi|6009426|dbj|BAA84885.1| (AB024946) orf50 [Escherichia coli].
 
     0.804
Z4317
Unknown protein encoded by ISEc8; Residues 1 to 468 of 482 are 63.57 pct identical to residues 1 to 470 of 523 from GenPept 118 : gi|6009427|dbj|BAA84886.1| (AB024946) orf51 [Escherichia coli].
       0.714
Z1826
Putative IS encoded protein; Residues 1 to 53 of 53 are 100.00 pct identical to residues 1 to 53 of 121 from GenPept 118 : gi|4099031|gb|AAD10296.1| (U82084) unknown [bacteriophage SfX].
  
     0.700
Z4314
Unknown protein encoded by ISEc8; Residues 56 to 261 of 261 are 98.54 pct identical to residues 307 to 512 of 512 from GenPept 118 : gi|3414883|gb|AAC31494.1| (AF071034) L0015 [Escherichia coli].
 
     0.623
Z0322
Unknown protein encoded by IS2; Residues 1 to 117 of 121 are 70.94 pct identical to residues 134 to 250 of 263 from GenPept 118 : gi|6358776|gb|AAF07358.1|AC011665_17 (AC011665) transposase-like protein (TnpF) [Arabidopsis thaliana].
  
    0.546
Z1825
Putative IS encoded protein; Residues 1 to 301 of 301 are 99.00 pct identical to residues 1 to 301 of 301 from GenPept 118 : gi|7800436|gb|AAF70032.1|AF250878_193 (AF250878) IS2 hypothetical orf [Salmonella typhi].
  
    0.495
yadD
Orf, hypothetical protein; Residues 1 to 298 of 298 are 96.97 pct identical to residues 1 to 298 of 300 from Escherichia coli K-12 Strain MG1655: B0132.
  
     0.482
rpnD
Hypothetical protein; A low activity DNA endonuclease probably yielding 3'-hydroxyl ends. Involved in RecA-independent recombination and horizontal gene transfer (By similarity).
  
     0.475
Z2080
Putative IS encoded protein within CP-933O; Residues 1 to 134 of 230 are 98.50 pct identical to residues 11 to 144 of 512 from GenPept 118 : gi|3414883|gb|AAC31494.1| (AF071034) L0015 [Escherichia coli].
  
     0.467
yhgA
Orf, hypothetical protein; Residues 1 to 292 of 292 are 98.97 pct identical to residues 1 to 292 of 292 from Escherichia coli K-12 Strain MG1655: B3411.
  
     0.466
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.