STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygjROrf, hypothetical protein; Residues 1 to 334 of 334 are 98.20 pct identical to residues 1 to 334 of 334 from Escherichia coli K-12 Strain MG1655: B3087. (334 aa)    
Predicted Functional Partners:
ybiI
Orf, hypothetical protein; Residues 1 to 88 of 88 are 97.72 pct identical to residues 1 to 88 of 88 from Escherichia coli K-12 Strain MG1655: B0803.
      
 0.733
ycgB
Putative sporulation protein; Residues 1 to 510 of 510 are 99.80 pct identical to residues 1 to 510 of 510 from Escherichia coli K-12 Strain MG1655: B1188.
      
 0.720
uxaB
Altronate oxidoreductase; Residues 1 to 483 of 483 are 99.58 pct identical to residues 1 to 483 of 483 from Escherichia coli K-12 Strain MG1655: B1521; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
     
 0.704
ygjQ
Orf, hypothetical protein; Residues 1 to 230 of 230 are 93.47 pct identical to residues 1 to 230 of 230 from Escherichia coli K-12 Strain MG1655: B3086.
       0.590
ychK
Orf, hypothetical protein; Residues 1 to 314 of 314 are 99.68 pct identical to residues 1 to 314 of 314 from Escherichia coli K-12 Strain MG1655: B1234.
      
 0.558
yjfO
Orf, hypothetical protein; Residues 1 to 142 of 142 are 99.29 pct identical to residues 1 to 142 of 142 from Escherichia coli K-12 Strain MG1655: B4189.
      
 0.558
ybhN
Orf, hypothetical protein; Residues 1 to 318 of 318 are 99.68 pct identical to residues 1 to 318 of 318 from Escherichia coli K-12 Strain MG1655: B0788.
   
  
 0.555
ybjQ
Orf, hypothetical protein; Residues 1 to 107 of 107 are 100.00 pct identical to residues 1 to 107 of 107 from Escherichia coli K-12 Strain MG1655: B0866; Belongs to the UPF0145 family.
      
 0.555
ycjR
Putative transient receptor potential locus; Residues 1 to 262 of 262 are 98.47 pct identical to residues 4 to 265 of 265 from Escherichia coli K-12 Strain MG1655: B1314.
  
  
 0.502
frlC
Hypothetical protein; Catalyzes the reversible interconversion of fructoselysine with its C-3 epimer, psicoselysine. Allows E.coli to utilize psicoselysine for growth. Does not act on psicose or fructoselysine 6- phosphate; Belongs to the FrlC family.
  
  
 0.502
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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