STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lpfD-2Putative fimbrial protein; Residues 22 to 358 of 360 are 27.90 pct identical to residues 29 to 355 of 356 from GenPept 118 : gi|1787173|gb|AAC74027.1| (AE000196) homolog of Salmonella FimH protein [Escherichia coli]. (360 aa)    
Predicted Functional Partners:
lpfB
Putative fimbrial chaperone; Residues 1 to 232 of 232 are 67.38 pct identical to residues 1 to 232 of 232 from GenPept 118 : gi|829372|gb|AAA73967.1| (U18559) lpfB gene product [Salmonella typhimurium].
   
 
 0.768
lpfC
Putative fimbrial usher; Part of the lpfABCC'DE fimbrial operon. LP fimbriae may participate in the interaction with eukaryotic cells by assisting in microcolony formation. Could be involved in the export and assembly of the fimbrial subunits across the outer membrane.
   
 
 0.739
lpfC-2
Putative fimbrial usher; Part of the lpfABCC'DE fimbrial operon. LP fimbriae may participate in the interaction with eukaryotic cells by assisting in microcolony formation. Could be involved in the export and assembly of the fimbrial subunits across the outer membrane.
   
 
 0.739
fimD-2
Putative fimbrial usher; Residues 12 to 844 of 844 are 40.82 pct identical to residues 18 to 842 of 842 from GenPept 118 : gi|829373|gb|AAA73968.1| (U18559) lpfC gene product [Salmonella typhimurium].
  
   0.720
lpfE
Putative fimbrial subunit; Part of the lpfABCC'DE fimbrial operon. LP fimbriae may participate in the interaction with eukaryotic cells by assisting in microcolony formation.
   
  
 0.702
yidE
Putative transport protein; Residues 1 to 561 of 561 are 100.00 pct identical to residues 1 to 561 of 561 from Escherichia coli K-12 Strain MG1655: B3685.
      
 0.701
Z5223
Putative fimbrial chaperone; No significant matches.
  
   0.692
lpfD-3
Putative fimbrial protein; Residues 3 to 354 of 356 are 25.75 pct identical to residues 14 to 355 of 356 from GenPept 118 : gi|1787173|gb|AAC74027.1| (AE000196) homolog of Salmonella FimH protein [Escherichia coli].
      
0.689
lpfA-2
Putative major fimbrial subuit; Residues 1 to 198 of 200 are 31.27 pct identical to residues 1 to 184 of 185 from GenPept 118 : gi|913907|gb|AAB33536.1| (S76043) FimA=SEF21 type 1 structural fimbrin [Salmonella enteritidis, 27655-3b, Peptide, 185 aa].
     
 0.608
pstS
High-affinity phosphate-specific transport system; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
     
 0.573
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.