STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjiKHypothetical protein; Residues 20 to 328 of 329 are 78.96 pct identical to residues 14 to 322 of 323 from Escherichia coli K-12 Strain MG1655: B4333. (329 aa)    
Predicted Functional Partners:
inaA
pH-inducible protein involved in stress response; Residues 1 to 216 of 216 are 98.14 pct identical to residues 1 to 216 of 216 from Escherichia coli K-12 Strain MG1655: B2237.
 
     0.773
waaP
Putative LPS biosynthesis enzyme; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
     0.749
yjiJ
Putative transport protein; Residues 1 to 387 of 392 are 90.69 pct identical to residues 1 to 387 of 392 from Escherichia coli K-12 Strain MG1655: B4332.
 
     0.740
rfaG
Residues 1 to 374 of 374 are 90.10 pct identical to residues 1 to 374 of 374 from Escherichia coli K-12 Strain MG1655: B3631.
  
     0.719
frvR
Putative frv operon regulatory protein; Residues 1 to 582 of 582 are 98.28 pct identical to residues 1 to 582 of 582 from Escherichia coli K-12 Strain MG1655: B3897.
  
     0.711
yijP
Orf, hypothetical protein; Residues 1 to 577 of 577 are 99.13 pct identical to residues 1 to 577 of 577 from Escherichia coli K-12 Strain MG1655: B3955.
  
   
 0.667
Z2261
Unknown protein associated with Rhs element; Residues 1 to 161 of 167 are 96.27 pct identical to residues 1 to 161 of 1409 from GenPept 118 : gi|2920624|gb|AAC32464.1| (AF044499) core protein [Escherichia coli].
  
     0.590
sohA
Putative protease; Residues 1 to 111 of 111 are 99.09 pct identical to residues 1 to 111 of 111 from Escherichia coli K-12 Strain MG1655: B3129.
  
     0.560
recE
Putative exodeoxyribonuclease VIII of prophage CP-933R; Residues 1 to 866 of 866 are 99.19 pct identical to residues 1 to 866 of 866 from Escherichia coli K-12 Strain MG1655: B1350.
  
     0.557
nrfG
Part of formate-dependent nitrite reductase complex; Required for formate-dependent nitrite reduction. Not required for the biosynthesis of any of the c-type cytochromes nor for the secretion of the periplasmic cytochromes.
  
    0.547
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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