STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO33054.1Fur family transcriptional regulator, peroxide stress response regulator; Belongs to the Fur family. (134 aa)    
Predicted Functional Partners:
SFO38419.1
Sigma-70, region 4.
  
 
 0.987
SFO33074.1
Rubrerythrin.
  
  
 0.829
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.567
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.514
SFO01664.1
Rhodanese-related sulfurtransferase.
  
  
 0.486
SFO32456.1
Rhodanese-like domain-containing protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.486
coaX
Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.475
SFO33033.1
tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.475
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.464
SFO32990.1
PucR C-terminal helix-turn-helix domain-containing protein.
       0.447
Your Current Organism:
Eubacterium pyruvativorans
NCBI taxonomy Id: 155865
Other names: ATCC BAA-574, E. pyruvativorans, Eubacterium pyruvativorans Wallace et al. 2003, Eubacterium pyruvivorans, Eubacterium pyruvovorans, NCIMB 13911, strain I-6, strain i6
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