STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61207.1ABC transporter family protein; [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component. (255 aa)    
Predicted Functional Partners:
AQM59637.1
Binding--dependent transport system inner membrane component family protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.980
AQM61384.1
NMT1-like family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.959
NPD11_915
Binding--dependent transport system inner membrane component family protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.766
AQM60472.1
lrgA family protein; [R] COG1380 Putative effector of murein hydrolase LrgA.
       0.622
AQM59507.1
lrgB-like family protein; [M] COG1346 Putative effector of murein hydrolase.
       0.622
NPD11_917
Bacterial extracellular solute-binding s, 3 family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
  
 0.611
NPD11_721
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
      0.598
NPD11_951
Binding--dependent transport system inner membrane component family protein; [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.549
NPD11_952
Bacterial extracellular solute-binding s, 3 family protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
  
  
 0.525
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.439
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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