Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQM59621.1Low molecular weight phosphotyrosine phosphatase family protein; [T] COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (135 aa)    
Predicted Functional Partners:
AQM59827.1
Sodium Bile acid symporter family protein; [P] COG0798 Arsenite efflux pump ACR3 and related permeases.
 
  
 0.882
trxA
Thioredoxin: thioredoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
 
 0.847
AQM60591.1
DNA topoisomerase family protein; [L] COG0550 Topoisomerase IA.
  
    0.613
NPD11_677
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
 
 0.543
trxB
TRX_reduct: thioredoxin-disulfide reductase; [O] COG0492 Thioredoxin reductase.
  
 
 0.509
AQM59318.1
tspO/MBR family protein; [T] COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog).
  
    0.472
ysxC
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.454
NPD11_489
Thioredoxin family protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.435
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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