STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59169.1UTRA domain protein; [K] COG2188 Transcriptional regulators. (236 aa)    
Predicted Functional Partners:
AQM59760.1
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
  
 0.561
NPD11_679
PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
  
 0.519
AQM58798.1
Xylose isomerase-like TIM barrel family protein; [G] COG3623 Putative L-xylulose-5-phosphate 3-epimerase.
  
  
 0.490
NPD11_619
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein; [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
  
 0.459
NPD11_678
Helix-turn-helix family protein; [K] COG1609 Transcriptional regulators.
  
   
 0.455
celB
cello_pts_IIC: PTS system, cellobiose-specific IIC component; [G] COG1455 Phosphotransferase system cellobiose-specific component IIC.
  
    0.454
AQM61198.1
Glycosyl hydrolase 1 family protein; [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase.
       0.428
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.