STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araDaraD: L-ribulose-5-phosphate 4-epimerase; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases. (232 aa)    
Predicted Functional Partners:
AQM58798.1
Xylose isomerase-like TIM barrel family protein; [G] COG3623 Putative L-xylulose-5-phosphate 3-epimerase.
 
 0.989
rpe
Rpe: ribulose-phosphate 3-epimerase; [G] COG0036 Pentose-5-phosphate-3-epimerase.
    
 0.934
AQM60392.1
[G] COG3414 Phosphotransferase system, galactitol-specific IIB component.
 
  
 0.746
AQM61265.1
Hypothetical protein.
 
     0.688
AQM59331.1
Beta-lactamase superfamily domain protein; [R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
 
   
 0.575
AQM61472.1
PTS system sugar-specific permease component family protein; [S] COG3037 Uncharacterized protein conserved in bacteria.
 
  
 0.573
AQM60028.1
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein; [G] COG1070 Sugar (pentulose and hexulose) kinases.
 
  
 0.566
AQM59735.1
Pterin binding enzyme family protein; [E] COG1410 Methionine synthase I, cobalamin-binding domain.
  
  
 0.554
fruA
fruA: PTS system, fructose subfamily, IIA component domain protein; [G] COG1299 Phosphotransferase system, fructose-specific IIC component.
  
  
 0.478
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
  
 0.403
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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