STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59433.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
AQM60146.1
birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase; [H] COG0340 Biotin-(acetyl-CoA carboxylase) ligase.
     
 0.633
AQM60840.1
Conserved hypothetical protein; [S] COG3906 Uncharacterized protein conserved in bacteria.
 
     0.518
NPD11_367
spoIIIAH-like family protein.
  
     0.494
AQM61051.1
[C] COG1527 Archaeal/vacuolar-type H+-ATPase subunit C.
 
     0.480
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
      
 0.459
atpE-2
ATP synthase (E/31 kDa) subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.457
AQM60384.1
Hypothetical protein; uvrD/REP helicase N-terminal domain protein; [R] COG3973 Superfamily I DNA and RNA helicases.
       0.455
atpF-2
ATP synthase (F/14-kDa) subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.453
ntpD
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.443
AQM58658.1
Conserved hypothetical protein; [S] COG4684 Predicted membrane protein.
 
   
 0.405
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.