STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61249.1Conserved hypothetical protein; [R] COG1988 Predicted membrane-bound metal-dependent hydrolases. (196 aa)    
Predicted Functional Partners:
AQM59693.1
Hypothetical protein.
  
     0.594
AQM60489.1
Conserved hypothetical protein; [S] COG1289 Predicted membrane protein.
  
   
 0.585
AQM61069.1
C_GCAxxG_C_C: C_GCAxxG_C_C family protein.
  
     0.511
AQM60791.1
Conserved hypothetical protein; [S] COG1289 Predicted membrane protein.
  
   
 0.510
AQM59747.1
Ferritin-like domain protein; Iron-storage protein.
       0.506
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.499
NPD11_655
Pentapeptide repeats family protein; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
     0.497
AQM59432.1
F5/8 type C domain protein.
  
     0.495
AQM60083.1
Beta-eliminating lyase family protein; [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
       0.478
dcm
Dcm: DNA (cytosine-5-)-methyltransferase family protein; [L] COG0270 Site-specific DNA methylase.
   
    0.476
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.