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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_109[L] COG0629 Single-stranded DNA-binding protein. (219 aa)    
Predicted Functional Partners:
NPD11_107
Hypothetical protein.
 
     0.894
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 
 0.829
AQM61009.1
B12 binding domain protein; [C] COG1032 Fe-S oxidoreductase.
  
    0.762
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
    0.746
NPD11_120
Small, acid-soluble spore s, alpha/beta type family protein.
  
     0.730
AQM58934.1
lysM domain protein; [M] COG1388 FOG: LysM repeat.
 
   
 0.724
AQM58986.1
ATPase associated with various cellular activities family protein; [L] COG2812 DNA polymerase III, gamma/tau subunits.
 
 
 
 0.685
AQM60186.1
dnaD_dom: DnaD domain protein; [L] COG3935 Putative primosome component and related proteins.
 
     0.685
NPD11_108
Glycosyl hydrolase 57 family protein; [G] COG0726 Predicted xylanase/chitin deacetylase.
  
    0.674
dnaE
Polc: DNA polymerase III, alpha subunit; [L] COG0587 DNA polymerase III, alpha subunit.
   
 
 0.619
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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