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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61009.1B12 binding domain protein; [C] COG1032 Fe-S oxidoreductase. (560 aa)    
Predicted Functional Partners:
AQM59135.1
Hypothetical protein.
       0.769
NPD11_109
[L] COG0629 Single-stranded DNA-binding protein.
  
    0.762
AQM59686.1
Glucose / Sorbosone dehydrogenase family protein.
       0.643
AQM58656.1
V-type ATPase; 116kDa subunit; [C] COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
       0.622
AQM58923.1
ATP synthase B/B' CF family protein.
       0.622
ntpK
V-type sodium ATPase subunit K; [C] COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; Belongs to the V-ATPase proteolipid subunit family.
       0.573
atpE-2
ATP synthase (E/31 kDa) subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.556
atpF-2
ATP synthase (F/14-kDa) subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.553
AQM61051.1
[C] COG1527 Archaeal/vacuolar-type H+-ATPase subunit C.
       0.553
spoVB
spore_V_B: stage V sporulation protein B; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
       0.547
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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