Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQM59943.1Pseudouridine synthase, RluA family protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (324 aa)    
Predicted Functional Partners:
AQM60790.1
Polysaccharide biosynthesis family protein; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
       0.811
AQM59524.1
Hypothetical protein; uvrD/REP helicase N-terminal domain protein; [L] COG0210 Superfamily I DNA and RNA helicases.
 
     0.667
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 
 0.583
AQM59561.1
Amidohydrolases: amidohydrolase family protein; [R] COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.579
AQM59495.1
CYTH domain protein; [F] COG1437 Adenylate cyclase, class 2 (thermophilic).
  
    0.574
AQM59365.1
Radc: DNA repair RadC family protein; [L] COG2003 DNA repair proteins; Belongs to the UPF0758 family.
  
    0.549
NPD11_913
dnaJ domain protein; [O] COG2214 DnaJ-class molecular chaperone.
 
 
   0.545
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
    0.537
AQM60106.1
RNA 2'-O ribose methyltransferase substrate binding family protein; [J] COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
 
 0.536
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.525
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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