Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NPD11_113Binding--dependent transport system inner membrane component family protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (314 aa)    
Predicted Functional Partners:
NPD11_112
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
NPD11_114
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 0.999
NPD11_115
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 0.999
NPD11_116
Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 0.996
AQM60410.1
Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.981
AQM59642.1
Peptidase M28 family protein; [R] COG2234 Predicted aminopeptidases.
  
 
 0.947
AQM59952.1
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein; [E] COG0765 ABC-type amino acid transport system, permease component.
  
  
 0.401
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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