STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdctyr_de_CO2_Ent: tyrosine decarboxylase; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins. (617 aa)    
Predicted Functional Partners:
AQM60970.1
Beta-eliminating lyase family protein; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
  
 
 0.905
hisC
hisC: histidinol-phosphate transaminase; [E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
  0.900
AQM59305.1
Amino acid permease family protein; [E] COG0531 Amino acid transporters.
 
  
 0.862
NPD11_927
Amino acid permease family protein; [E] COG0531 Amino acid transporters.
 
  
 0.710
AQM60234.1
grpB family protein; [S] COG2320 Uncharacterized conserved protein.
       0.431
gadC
Glutamate:gamma-aminobutyrate antiporter; 2A0307_GadC: glutamate:gamma-aminobutyrate antiporter; [E] COG0531 Amino acid transporters.
 
  
 0.418
AQM59376.1
Membrane transport family protein; [R] COG0679 Predicted permeases.
  
     0.412
gadC-2
Glutamate:gamma-aminobutyrate antiporter; 2A0307_GadC: glutamate:gamma-aminobutyrate antiporter; [E] COG0531 Amino acid transporters.
 
  
 0.405
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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