STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_115Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (324 aa)    
Predicted Functional Partners:
NPD11_113
Binding--dependent transport system inner membrane component family protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
NPD11_112
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.996
NPD11_116
Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.995
NPD11_114
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 
0.994
AQM60410.1
Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.961
AQM60897.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     
0.731
AQM59418.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     
0.704
NPD11_949
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     
0.701
AQM60302.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     
0.688
AQM58947.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     
0.633
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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