STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58639.1ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (225 aa)    
Predicted Functional Partners:
AQM60724.1
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.961
NPD11_721
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 0.920
AQM60746.1
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
    0.613
AQM59125.1
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.563
AQM59181.1
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.557
NPD11_719
hlyD secretion family protein; [M] COG0845 Membrane-fusion protein.
 
 
 0.550
NPD11_901
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.549
AQM59385.1
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.513
AQM60475.1
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.513
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.440
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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