STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60305.1Hemeryth_dom: hemerythrin-like metal-binding domain protein; [P] COG2703 Hemerythrin. (136 aa)    
Predicted Functional Partners:
fprA2
Flavodoxin family protein; [C] COG0426 Uncharacterized flavoproteins.
  
  
 0.517
AQM59031.1
Flavodoxin family protein; [C] COG0426 Uncharacterized flavoproteins.
  
  
 0.480
AQM59004.1
Flavodoxin; Flav_short: flavodoxin; [C] COG0716 Flavodoxins.
  
  
 0.480
NPD11_933
Flavodoxin; Flav_short: flavodoxin; [C] COG0716 Flavodoxins.
  
  
 0.480
AQM59415.1
cheW-like domain protein; [NT] COG0835 Chemotaxis signal transduction protein.
 
    0.457
AQM58665.1
cheW-like domain protein; [NT] COG0835 Chemotaxis signal transduction protein.
 
    0.453
AQM61258.1
Sodium/hydrogen exchanger family protein; [P] COG0475 Kef-type K+ transport systems, membrane components.
       0.445
AQM59628.1
cheC-like family protein; [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation.
 
 
   0.437
NPD11_331
[NT] COG0840 Methyl-accepting chemotaxis protein.
 
    0.417
AQM60238.1
[NT] COG0840 Methyl-accepting chemotaxis protein.
 
    0.410
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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