STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59739.1RNase H family protein; [R] COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein. (215 aa)    
Predicted Functional Partners:
AQM60124.1
Hypothetical protein.
 
     0.807
AQM60070.1
Tetratricopeptide repeat family protein; [K] COG1396 Predicted transcriptional regulators.
 
     0.618
AQM58775.1
Helix-turn-helix family protein; [R] COG0457 FOG: TPR repeat.
 
     0.611
AQM59495.1
CYTH domain protein; [F] COG1437 Adenylate cyclase, class 2 (thermophilic).
  
     0.540
AQM60639.1
Hypothetical protein.
       0.538
AQM61283.1
NMT1/THI5 like family protein; [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; Belongs to the nlpA lipoprotein family.
       0.434
AQM60683.1
Modulator of DNA gyrase family protein; [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
      
 0.400
glyA
Beta-eliminating lyase family protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
   
    0.400
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.