STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60201.1Berberine and berberine like family protein; [C] COG0277 FAD/FMN-containing dehydrogenases. (449 aa)    
Predicted Functional Partners:
AQM58770.1
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.571
AQM59266.1
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.564
AQM59987.1
efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
     
 0.562
AQM59340.1
Hypothetical protein.
  
     0.499
AQM60467.1
Conserved hypothetical protein; [K] COG1309 Transcriptional regulator.
 
     0.496
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
  
 
 0.473
AQM60876.1
F5/8 type C domain protein.
  
     0.461
AQM59241.1
Putative dihydrodipicolinate synthase/N-acetylneuraminate lyase.
  
 0.444
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.444
AQM60670.1
Transporter, lactate permease family protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.441
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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