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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_124Oligopeptide transporter, OPT family; [S] COG1297 Predicted membrane protein. (658 aa)    
Predicted Functional Partners:
NPD11_125
Coenzyme PQQ synthesis D family protein.
       0.836
pepD
Aa-his-dipept: Xaa-His dipeptidase family protein; [E] COG2195 Di- and tripeptidases.
       0.619
atpB
ATP synthase A chain family protein; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
   
    0.431
NPD11_127
HDIG: HDIG domain protein; [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase.
       0.419
NPD11_230
Cytidylyltransferase family protein; [I] COG0575 CDP-diglyceride synthetase; Belongs to the CDS family.
   
    0.402
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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