STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60910.1Putative membrane protein. (130 aa)    
Predicted Functional Partners:
AQM59776.1
Putative membrane protein.
 
     0.884
AQM60274.1
iclR helix-turn-helix domain protein; [K] COG1846 Transcriptional regulators.
 
     0.823
AQM60489.1
Conserved hypothetical protein; [S] COG1289 Predicted membrane protein.
  
     0.520
AQM61124.1
Voltage-dependent anion channel family protein; [P] COG1275 Tellurite resistance protein and related permeases.
  
     0.456
NPD11_633
Pentapeptide repeats family protein; [S] COG1357 Uncharacterized low-complexity proteins.
  
     0.426
AQM61069.1
C_GCAxxG_C_C: C_GCAxxG_C_C family protein.
 
     0.419
AQM60791.1
Conserved hypothetical protein; [S] COG1289 Predicted membrane protein.
  
     0.409
AQM58968.1
[C] COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family.
       0.402
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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