STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60657.1Beta-lactamase enzyme family protein; [V] COG2367 Beta-lactamase class A. (300 aa)    
Predicted Functional Partners:
NPD11_989
D-alanyl-D-alanine carboxypeptidase family protein; [V] COG2367 Beta-lactamase class A.
  
     0.624
NPD11_994
Mur ligase middle domain protein; [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase.
  
     0.575
NPD11_995
cobB/CobQ-like glutamine amidotransferase domain protein; [R] COG3442 Predicted glutamine amidotransferase.
 
     0.567
AQM59155.1
Nitroreductase family protein; [R] COG3560 Predicted oxidoreductase related to nitroreductase.
       0.453
AQM58853.1
Hypothetical protein.
       0.428
ytxC
spo_ytxC: putative sporulation protein YtxC.
  
     0.415
AQM58684.1
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
  
     0.415
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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