STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_128Hypothetical protein. (233 aa)    
Predicted Functional Partners:
NPD11_208
Radical SAM superfamily protein; [KB] COG1243 Histone acetyltransferase.
     0.887
ytxC
spo_ytxC: putative sporulation protein YtxC.
 
     0.733
NPD11_601
hhH-GPD superbase excision DNA repair family protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.
  
     0.609
AQM60981.1
Hypothetical protein; 8-oxoguanine DNA glycosylase, N-terminal domain protein; [L] COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.
  
     0.602
NPD11_914
Putative membrane protein.
  
     0.553
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.527
rpmI
rpmI_bact: ribosomal protein L35; [J] COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
       0.516
AQM60481.1
Glycosyltransferase 36 associated family protein; [G] COG3459 Cellobiose phosphorylase.
  
     0.504
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.501
NPD11_107
Hypothetical protein.
  
     0.497
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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