STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60719.1Peptidase M50 family protein; [R] COG1994 Zn-dependent proteases. (286 aa)    
Predicted Functional Partners:
AQM60632.1
Peptidase M23 family protein; [M] COG0739 Membrane proteins related to metalloendopeptidases.
       0.761
AQM60048.1
Conserved hypothetical protein; [J] COG2868 Predicted ribosomal protein.
 
     0.677
mrdB
rodA_shape: rod shape-determining protein RodA; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
  
  
 0.629
AQM60582.1
Conserved hypothetical protein; [S] COG5011 Uncharacterized protein conserved in bacteria.
       0.616
AQM58988.1
Radical SAM superfamily protein; [C] COG1032 Fe-S oxidoreductase.
       0.616
AQM61441.1
RNaseEG: ribonuclease, Rne/Rng family domain protein; [J] COG1530 Ribonucleases G and E.
       0.607
spoIIM
spo_II_M: stage II sporulation protein M; [S] COG1300 Uncharacterized membrane protein.
 
  
 0.574
spoIVB
spore_IV_B: stage IV sporulation protein B; [M] COG0750 Predicted membrane-associated Zn-dependent proteases 1.
  
   
 0.571
spoIIID
spore_III_D: sporulation transcriptional regulator SpoIIID.
   
  
 0.546
rpmA
L27: ribosomal protein L27; [J] COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
       0.521
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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