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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60632.1Peptidase M23 family protein; [M] COG0739 Membrane proteins related to metalloendopeptidases. (249 aa)    
Predicted Functional Partners:
AQM60719.1
Peptidase M50 family protein; [R] COG1994 Zn-dependent proteases.
       0.761
mrdB
rodA_shape: rod shape-determining protein RodA; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
     
 0.627
AQM58988.1
Radical SAM superfamily protein; [C] COG1032 Fe-S oxidoreductase.
  
    0.582
AQM61441.1
RNaseEG: ribonuclease, Rne/Rng family domain protein; [J] COG1530 Ribonucleases G and E.
  
  
 0.556
AQM60582.1
Conserved hypothetical protein; [S] COG5011 Uncharacterized protein conserved in bacteria.
       0.538
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
  
    0.444
AQM60430.1
3D domain protein; [S] COG3583 Uncharacterized protein conserved in bacteria.
  
  
 0.415
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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