STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59891.1Periplasmic solute binding family protein; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family. (296 aa)    
Predicted Functional Partners:
AQM60743.1
ABC 3 transport family protein; [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 0.990
AQM59105.1
ABC transporter family protein; [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
 
 0.990
AQM60454.1
Calcineurin-like phosphoesterase family protein; [L] COG0420 DNA repair exonuclease.
       0.673
AQM60864.1
AAA domain protein; [S] COG4717 Uncharacterized conserved protein.
       0.626
AQM60473.1
mutS domain V family protein; [L] COG0249 Mismatch repair ATPase (MutS family); Belongs to the DNA mismatch repair MutS family.
       0.609
NPD11_608
cobW/HypB/UreG, nucleotide-binding domain protein; [R] COG0523 Putative GTPases (G3E family).
  
  
 0.590
rpsZ
Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.551
NPD11_607
cobW/HypB/UreG, nucleotide-binding domain protein; [R] COG0523 Putative GTPases (G3E family).
  
  
 0.520
NPD11_911
FGAM-synthase: phosphoribosylformylglycinamidine synthase; [F] COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain.
     
 0.510
rpmB
L28: ribosomal protein L28; [J] COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.509
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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