STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60454.1Calcineurin-like phosphoesterase family protein; [L] COG0420 DNA repair exonuclease. (377 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.999
AQM60864.1
AAA domain protein; [S] COG4717 Uncharacterized conserved protein.
 
 
 0.969
AQM59931.1
AAA domain protein; [L] COG0419 ATPase involved in DNA repair.
  
 0.868
NPD11_416
Phage tail tape measure, family, core region domain protein.
  
 0.867
AQM59891.1
Periplasmic solute binding family protein; [P] COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
       0.673
AQM60473.1
mutS domain V family protein; [L] COG0249 Mismatch repair ATPase (MutS family); Belongs to the DNA mismatch repair MutS family.
  
 
 0.649
recQ
recQ: ATP-dependent DNA helicase RecQ; [L] COG0514 Superfamily II DNA helicase.
  
 0.631
recQ-2
recQ: ATP-dependent DNA helicase RecQ; [L] COG0514 Superfamily II DNA helicase.
  
 0.631
AQM58789.1
DEAD_2 family protein; [KL] COG1199 Rad3-related DNA helicases.
   
 0.622
AQM59451.1
[P] COG0659 Sulfate permease and related transporters (MFS superfamily).
  
   0.609
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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