STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60465.1Oxidoreductase, NAD-binding Rossmann fold family protein; [R] COG0673 Predicted dehydrogenases and related proteins. (328 aa)    
Predicted Functional Partners:
AQM58798.1
Xylose isomerase-like TIM barrel family protein; [G] COG3623 Putative L-xylulose-5-phosphate 3-epimerase.
  
  
 0.743
AQM59391.1
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
    0.701
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.577
lysS
lysS_bact: lysine--tRNA ligase; [J] COG1190 Lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.558
NPD11_521
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
  
  
 0.554
NPD11_541
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family.
  
  
 0.554
NPD11_676
pfkB carbohydrate kinase family protein; [G] COG0524 Sugar kinases, ribokinase family; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.554
AQM60919.1
[C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
  
 0.530
AQM60007.1
acyl-CoA reductase family protein; [C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
  
 0.530
gapN
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; [C] COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
  
 0.530
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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