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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61262.1spore_CotS: spore coat, CotS family protein. (333 aa)    
Predicted Functional Partners:
AQM60965.1
Glycosyl transferases group 1 family protein; [M] COG0438 Glycosyltransferase.
 
  
 0.861
yabG
spore_yabG: sporulation peptidase YabG.
 
  
 0.755
AQM58934.1
lysM domain protein; [M] COG1388 FOG: LysM repeat.
 
   
 0.752
AQM59053.1
Hypothetical protein.
  
    0.693
NPD11_120
Small, acid-soluble spore s, alpha/beta type family protein.
  
     0.684
NPD11_99
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
  
     0.664
ytxC
spo_ytxC: putative sporulation protein YtxC.
  
    0.662
AQM59446.1
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
  
     0.656
spoVB
spore_V_B: stage V sporulation protein B; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.654
yqfD
spore_yqfD: sporulation protein YqfD.
  
     0.613
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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