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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61048.1spore_CotS: spore coat, CotS family protein. (346 aa)    
Predicted Functional Partners:
AQM59406.1
spore_CotS: spore coat, CotS family protein.
 
   
0.923
AQM60367.1
Glycosyl transferases group 1 family protein; [M] COG0438 Glycosyltransferase.
 
  
 0.894
AQM59175.1
Hypothetical protein.
       0.770
AQM59446.1
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
  
     0.681
AQM59053.1
Hypothetical protein.
  
    0.680
NPD11_120
Small, acid-soluble spore s, alpha/beta type family protein.
  
     0.674
AQM58934.1
lysM domain protein; [M] COG1388 FOG: LysM repeat.
 
   
 0.673
AQM58775.1
Helix-turn-helix family protein; [R] COG0457 FOG: TPR repeat.
  
     0.620
ytxC
spo_ytxC: putative sporulation protein YtxC.
  
    0.604
yqfD
spore_yqfD: sporulation protein YqfD.
  
   
 0.593
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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