STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60773.1Bacterial extracellular solute-binding family protein; [E] COG3192 Ethanolamine utilization protein. (745 aa)    
Predicted Functional Partners:
AQM59099.1
[E] COG4766 Ethanolamine utilization protein.
 
  
 0.833
AQM60960.1
matE: MATE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump.
 
    0.734
AQM59087.1
Ethanolamine utilization EutN/carboxysome family protein; [QC] COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
  
 0.711
pduU
BMC domain protein; [E] COG4810 Ethanolamine utilization protein.
 
   
 0.682
eutJ
eutJ: ethanolamine utilization EutJ family protein; [E] COG4820 Ethanolamine utilization protein, possible chaperonin.
 
  
 0.648
AQM58750.1
[E] COG4917 Ethanolamine utilization protein; Belongs to the EutP/PduV family.
 
   
 0.637
AQM61099.1
degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria.
       0.620
AQM60626.1
BMC domain protein; [QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
  
 0.466
AQM61428.1
BMC domain protein; [QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
  
 0.415
AQM58747.1
Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.
       0.402
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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