STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60367.1Glycosyl transferases group 1 family protein; [M] COG0438 Glycosyltransferase. (375 aa)    
Predicted Functional Partners:
AQM59406.1
spore_CotS: spore coat, CotS family protein.
 
  
 0.907
AQM61048.1
spore_CotS: spore coat, CotS family protein.
 
  
 0.894
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.630
AQM61213.1
Mannose-6-phosphate isomerase family protein; [M] COG0836 Mannose-1-phosphate guanylyltransferase.
 
  
 0.604
AQM61262.1
spore_CotS: spore coat, CotS family protein.
 
  
 0.566
AQM60319.1
spore_CotS: spore coat, CotS family protein.
  
  
 0.544
AQM59175.1
Hypothetical protein.
       0.485
AQM59510.1
ABC transporter family protein; [GM] COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
 
 0.479
AQM58775.1
Helix-turn-helix family protein; [R] COG0457 FOG: TPR repeat.
 
   
 0.474
AQM60994.1
phospholipase/Carboxylesterase family protein; [R] COG1073 Hydrolases of the alpha/beta superfamily.
   
 
 0.459
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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