STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61099.1degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria. (288 aa)    
Predicted Functional Partners:
NPD11_194
yloV: DAK2 domain fusion YloV family protein; [R] COG1461 Predicted kinase related to dihydroxyacetone kinase.
 
 0.961
AQM60960.1
matE: MATE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump.
       0.686
AQM60773.1
Bacterial extracellular solute-binding family protein; [E] COG3192 Ethanolamine utilization protein.
       0.620
NPD11_193
Asp23 family protein; [S] COG1302 Uncharacterized protein conserved in bacteria.
 
    0.527
AQM58747.1
Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate.
     
 0.492
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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