STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60005.1Pyridine nucleotide-disulfide oxidoreductase family protein; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases. (320 aa)    
Predicted Functional Partners:
AQM60437.1
Conserved hypothetical protein; [S] COG3862 Uncharacterized protein with conserved CXXC pairs.
    0.959
AQM60364.1
Conserved hypothetical protein; [S] COG3862 Uncharacterized protein with conserved CXXC pairs.
 
    0.924
AQM59756.1
FAD dependent oxidoreductase family protein; [R] COG0579 Predicted dehydrogenase.
  
 0.846
NPD11_649
trkA-N domain protein; [R] COG0579 Predicted dehydrogenase.
  
 0.844
NPD11_779
FAD dependent oxidoreductase family protein; [R] COG0579 Predicted dehydrogenase.
  
 0.837
AQM60735.1
FAD dependent oxidoreductase family protein; [R] COG0579 Predicted dehydrogenase.
  
 0.798
trxA
Thioredoxin: thioredoxin; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
  
 
 0.626
AQM59926.1
[K] COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding).
 
    0.601
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
  
 
 0.536
trxB
TRX_reduct: thioredoxin-disulfide reductase; [O] COG0492 Thioredoxin reductase.
  
 
 0.506
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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