STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59953.1Putative lipoprotein. (485 aa)    
Predicted Functional Partners:
AQM60479.1
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
     0.946
AQM59234.1
Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.861
AQM60683.1
Modulator of DNA gyrase family protein; [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
       0.828
AQM59317.1
Modulator of DNA gyrase family protein; [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
       0.821
AQM59446.1
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
  
     0.666
AQM60483.1
HDIG: HDIG domain protein.
  
     0.593
AQM59017.1
Polysaccharide deacetylase family protein; [G] COG0726 Predicted xylanase/chitin deacetylase.
       0.582
AQM59290.1
BFD-like [2Fe-2S] binding domain protein; [R] COG0579 Predicted dehydrogenase.
  
     0.577
NPD11_310
Acetyltransferase family protein; [R] COG0456 Acetyltransferases.
  
     0.562
AQM59495.1
CYTH domain protein; [F] COG1437 Adenylate cyclase, class 2 (thermophilic).
  
     0.487
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.