STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59234.1Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (227 aa)    
Predicted Functional Partners:
NPD11_396
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
 0.978
AQM60479.1
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 0.975
AQM60947.1
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
  
 
0.910
NPD11_397
Hypothetical protein; Transcriptional regulatory, C terminal family protein; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
  
 
0.906
AQM60003.1
[T] COG0642 Signal transduction histidine kinase.
 
 0.861
AQM59953.1
Putative lipoprotein.
 
     0.861
NPD11_665
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
 
 0.857
AQM61498.1
HAMP domain protein; [T] COG0642 Signal transduction histidine kinase.
 
 
 0.844
AQM59022.1
[T] COG0642 Signal transduction histidine kinase.
 
 0.841
AQM60683.1
Modulator of DNA gyrase family protein; [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs.
     
 0.829
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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