Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NPD11_146Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat. (366 aa)    
Predicted Functional Partners:
AQM58775.1
Helix-turn-helix family protein; [R] COG0457 FOG: TPR repeat.
 
   
 0.781
AQM60070.1
Tetratricopeptide repeat family protein; [K] COG1396 Predicted transcriptional regulators.
  
   
 0.774
AQM59053.1
Hypothetical protein.
  
 
 0.772
AQM59544.1
Endodeoxyribonuclease RusA family protein.
  
     0.771
NPD11_99
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
 
 
 0.766
AQM59495.1
CYTH domain protein; [F] COG1437 Adenylate cyclase, class 2 (thermophilic).
  
     0.763
AQM61192.1
Hypothetical protein.
 
     0.747
AQM59341.1
Hypothetical protein.
 
     0.746
mreD
shape_MreD: rod shape-determining protein MreD.
 
     0.738
AQM58893.1
hesB_rel_seleno: HesB-like selenofamily protein; [S] COG0316 Uncharacterized conserved protein.
  
 
   0.736
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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