STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60410.1Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component. (495 aa)    
Predicted Functional Partners:
NPD11_112
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.983
NPD11_113
Binding--dependent transport system inner membrane component family protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.981
NPD11_114
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.978
NPD11_115
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.961
NPD11_116
Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
  
  
 
0.929
AQM61300.1
Hypothetical protein.
       0.667
AQM59642.1
Peptidase M28 family protein; [R] COG2234 Predicted aminopeptidases.
 
  
 0.567
AQM60048.1
Conserved hypothetical protein; [J] COG2868 Predicted ribosomal protein.
  
     0.498
AQM61335.1
Hypothetical protein.
  
     0.488
AQM61046.1
Signal peptidase (SPase) II family protein.
  
   
 0.485
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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