STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60693.1Pseudouridine synthase family protein; [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. (238 aa)    
Predicted Functional Partners:
xth
exoDNase_III: exodeoxyribonuclease III; [L] COG0708 Exonuclease III.
  
    0.653
AQM59853.1
Y Y Y domain protein.
       0.652
engA
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.602
cmk
Cmk: cytidylate kinase; [F] COG0283 Cytidylate kinase.
 
  
 0.554
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.535
AQM59190.1
Conserved hypothetical protein; [S] COG1671 Uncharacterized protein conserved in bacteria; Belongs to the UPF0178 family.
       0.462
AQM61367.1
N2,N2-dimethylguanosine tRNA methyltransferase family protein; [R] COG1092 Predicted SAM-dependent methyltransferases.
 
 
   0.427
AQM59427.1
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein; [R] COG0637 Predicted phosphatase/phosphohexomutase.
      0.417
pgi
Phosphoglucose isomerase family protein; [G] COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.412
NPD11_860
Miro-like family protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
 
     0.412
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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