STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61146.1ymaF family protein. (119 aa)    
Predicted Functional Partners:
NPD11_51
Hypothetical protein.
  
     0.627
NPD11_339
Hypothetical protein.
  
     0.504
NPD11_653
Polymer-forming cytoskeletal family protein; [M] COG1664 Integral membrane protein CcmA involved in cell shape determination.
  
     0.499
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.457
NPD11_652
Hypothetical protein.
  
     0.443
NPD11_654
Polymer-forming cytoskeletal family protein; [M] COG1664 Integral membrane protein CcmA involved in cell shape determination.
  
     0.426
AQM60565.1
Winged helix DNA-binding domain protein; [K] COG1846 Transcriptional regulators.
  
     0.408
AQM59329.1
Mor transcription activator family protein.
  
     0.406
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.