STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59361.13-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase. (282 aa)    
Predicted Functional Partners:
thlA
[I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 0.999
AQM59286.1
enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.999
AQM60885.1
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein; [I] COG1960 Acyl-CoA dehydrogenases.
 
 0.990
AQM61407.1
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.923
AQM60761.1
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.870
rex
Oxidoreductase, NAD-binding Rossmann fold family protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
     
 0.799
AQM58770.1
[C] COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.732
AQM59266.1
[C] COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.684
buk
Butyr_kinase: butyrate kinase; [C] COG3426 Butyrate kinase; Belongs to the acetokinase family.
     
 0.627
ptb
P_butyryltrans: phosphate butyryltransferase; [C] COG0280 Phosphotransacetylase.
     
 0.627
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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