STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_154spoVD_pbp: stage V sporulation protein D; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. (739 aa)    
Predicted Functional Partners:
ftsW
ftsW: cell division protein FtsW; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 0.960
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.939
AQM58724.1
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
  
0.927
AQM58647.1
[M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
  
0.926
mrdB
rodA_shape: rod shape-determining protein RodA; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 0.899
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.879
murE
UDP-N-acetylmuramyl-tripeptide synthetase family protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 0.877
NPD11_159
POTRA domain, FtsQ-type family protein; Essential cell division protein.
 
 
 0.867
AQM59971.1
Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 0.851
NPD11_153
Cell division FtsL family protein.
  
 
 0.833
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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