STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61359.1GIY-YIG catalytic domain protein; [L] COG2827 Predicted endonuclease containing a URI domain. (80 aa)    
Predicted Functional Partners:
AQM58746.1
Met-10+ like-family protein; [R] COG4123 Predicted O-methyltransferase.
  
  
 0.550
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.519
AQM60861.1
Hypothetical protein; Iron dependent repressor, N-terminal DNA binding domain protein; [K] COG1846 Transcriptional regulators.
       0.488
AQM60302.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.467
AQM61147.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.467
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.